PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 281aa    MW: 32052.3 Da    PI: 7.585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05123145123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F+++  L  H++ H
  XP_009142029.1 123 FECHYCFRNFPTSQALGGHQNAH 145
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.1E-5119151No hitNo description
PfamPF139122.3E-5122147IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQNLISCLPV SETANLSNSF IPHSLSSMDE TNGRRETHDF MNVNVESFSQ LPFIRRTPPK  60
EKSSIIRLFG QELVGDNSSD AQQEDFYVDS SETTTTKINE ESSENVKDKD KDKEKDNSNN  120
RRFECHYCFR NFPTSQALGG HQNAHKRERQ HAKRGSMPSY LHHADHHHVY GFLNNHHHRH  180
YPTWTTEARF YGGGVGGNQT PSYYSRTLLP PPSSSNPPMI NGSPLGLWRV PPPSTSANAI  240
HGVYSASPAF QTHEQERKES KWPYRLMKPN VQDHVSLDLH L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.308870.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744972.10.0PREDICTED: zinc finger protein 8-like
RefseqXP_009142029.10.0PREDICTED: zinc finger protein 8-like
SwissprotP937511e-125ZFP8_ARATH; Zinc finger protein 8
TrEMBLM4DK720.0M4DK72_BRARP; Uncharacterized protein
STRINGBra016900.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-103zinc finger protein 8